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Showing posts from February, 2011

R for beginners and intermediate users 3: plotting with colours

For my third post on my R tutorials for beginners and intermediate users, I shall finally touch on the subject matter that prompted me to start these tutorials - plotting with group structures in colour.

If you are familiar with R, then you may have noticed that assigning group structure is not all that straightforward. You can have a dataset that may have a column specifically for group structure such as this:

B0 B1 B2 Family
Acrocanthosaurus 0.308 -0.00329 3.28E-05 Allosauroidea
Allosaurus 0.302 -0.00285 2.04E-05 Allosauroidea
Archaeopteryx 0.142 -0.000871 2.98E-06 Aves
Bambiraptor 0.182 -0.00161 1.10E-05 Dromaeosauridae
Baryonychid 0.189 -0.00238 2.20E-05 Basal_Tetanurae
Carcharodontosaurus 0.369 -0.00502 5.82E-05 Allosauroidea
Carnotaurus 0.312 -0.00324 2.94E-05 Neoceratosauria
Ceratosaurus 0.377 -0.00522 6.07E-05 Neoceratosauria
Citipati 0.278 -0.00119 5.08E-06 Oviraptorosauria
Coelophysi…